Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_1984148_1984676_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1984148 - 1984676

Intron Length:

529

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTGAGAGCG

5'SS Class:

strong_major

3'SS Sequence:

CTTTCTGTTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCTGAC

U12 Branch Point Sequence:

CCACCTCTGACG

Flanking Amino Acid:

NILERKEVLIAVIVGGVVGA

Intron Amino Acid Position:

412

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.8

0.82

0.9

68.6

36.5

Major BPS

69.1

0.47

60.7

37.6

Major PPT

85.3

0.79

0.8

80.2

31.8

Minor 5ss

25.3

-2.8

3.1

30.1

43.1

Minor BPS

45.5

-0.5

1.7

45.14

41.3

Associated Gene:

Gene:

SDC3

Ensembl Gene ID:

ENSAPLG00000020532

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031089

1981222 - 1985657

4436

ENSAPLT00000028595

1981222 - 1985116

3895