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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_1984840_1985250_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
1984840 - 1985250
Intron Length:
411

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGC|GTAGGACAA
5'SS Class:
weak_major
3'SS Sequence:
GGTTGCTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTATTT
Flanking Amino Acid:
QKPDKQEEFYASYLAPCFCL
Intron Amino Acid Position:
466

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.9
0.09
1.4
49.7
43.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
76.8
0.6
1
69.4
41.7
Minor 5ss
30.8
-2.2
3.3
33.8
42
Minor BPS
62.5
0.47
1.8
84.55
36.3

Associated Gene:

Gene:
SDC3
Ensembl Gene ID:
ENSAPLG00000020532
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031089
1981222 - 1985657
4436