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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_2066823_2067011_F

Intron Information:

Intron Rank:
144242
Intron Class:
major
Intron Phase:
Intron Coordinates:
2066823 - 2067011
Intron Length:
189

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTGGA
5'SS Class:
major
3'SS Sequence:
TTTCTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTCTAC
U12 Branch Point Sequence:
AAGGTTCTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
66.9
38.5
Major BPS
48.5
-0
1.4
50.2
44.9
Major PPT
92.4
0.95
0.6
88.6
20.8
Minor 5ss
38.2
-1.3
3.1
50
46.2
Minor BPS
40.7
-0.6
1.8
50.8
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027761
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045794
2064813 - 2067239
2427