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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_2169033_2175671_R

Intron Information:

Intron Rank:
134017
Intron Class:
major
Intron Phase:
Intron Coordinates:
2169033 - 2175671
Intron Length:
6639

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGGCT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
CCATCCAAAACG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
72.9
36.4
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
86.7
0.83
0.7
85.5
29.2
Minor 5ss
31.2
-2.1
3.7
47.6
48
Minor BPS
47.5
-0.3
2
52.77
47.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019364
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036469
2167458 - 2175794
8337