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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_2180740_2181738_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
2180740 - 2181738
Intron Length:
999

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
CTCTAACTCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAA
U12 Branch Point Sequence:
ACTCCTCTAACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
74.2
0.6
0.9
75.7
28
Major PPT
71.5
0.48
0.9
61.9
38.6
Minor 5ss
34.4
-1.8
3.4
46.7
48.6
Minor BPS
60.7
0.42
1.7
76.59
39.8

Associated Gene:

Gene:
LAPTM5
Ensembl Gene ID:
ENSAPLG00000009157
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009548
2180523 - 2204828
24306