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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_2181846_2190003_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2181846 - 2190003
Intron Length:
8158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTCTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAA
U12 Branch Point Sequence:
GCCCACTGAATT
Flanking Amino Acid:
ATVALGIFHMVMSILLLIEY
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
74.9
36.2
Major BPS
62
0.3
1
53
34.1
Major PPT
80.3
0.68
0.8
73.8
36.9
Minor 5ss
40.7
-1
2.8
49.7
41.9
Minor BPS
48.2
-0
1.7
60.16
43.1

Associated Gene:

Gene:
LAPTM5
Ensembl Gene ID:
ENSAPLG00000009157
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009548
2180523 - 2204828
24306