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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_2190098_2198498_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2190098 - 2198498
Intron Length:
8401

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGTTGC
5'SS Class:
major
3'SS Sequence:
TTCTTACTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
CTTTTCTTACTT
Flanking Amino Acid:
KDLDKDYYRVADVITSFLLI
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
65.8
41
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
82.5
0.73
0.7
78
29.5
Minor 5ss
39.3
-1.2
3.1
49.2
42.4
Minor BPS
68.4
0.66
1.6
82.74
39.5

Associated Gene:

Gene:
LAPTM5
Ensembl Gene ID:
ENSAPLG00000009157
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009548
2180523 - 2204828
24306