About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_2200674_2203410_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2200674 - 2203410
Intron Length:
2737

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGGCAT
U12 Branch Point Sequence:
CATGCAGTAAAA
Flanking Amino Acid:
IAFIAVLFLKAYMFKCVLSC
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.8
87.7
26.2
Major BPS
59.9
0.25
1.5
71.4
45.1
Major PPT
94
0.99
0.5
92.6
17.2
Minor 5ss
39.6
-1.2
2.9
54
43.3
Minor BPS
42.7
-0.5
2.3
54.78
43.6

Associated Gene:

Gene:
LAPTM5
Ensembl Gene ID:
ENSAPLG00000009157
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009548
2180523 - 2204828
24306