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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_2203504_2204518_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2203504 - 2204518
Intron Length:
1015

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATAAT
U12 Branch Point Sequence:
GTGACTATAATA
Flanking Amino Acid:
VKVDPQAAEKAVLPSYEEAL
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
75.5
0.63
1.1
76
34.4
Major PPT
90.3
0.91
0.6
88.5
21.1
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
51.9
0.06
1.6
61.69
38.6

Associated Gene:

Gene:
LAPTM5
Ensembl Gene ID:
ENSAPLG00000009157
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009548
2180523 - 2204828
24306