Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_2214743_2217711_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2214743 - 2217711

Intron Length:

2969

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGTGGG

5'SS Class:

strong_major

3'SS Sequence:

TTTTTGTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTTAT

U12 Branch Point Sequence:

TTTTCTTTTATT

Flanking Amino Acid:

GVWGAPPQPRGTLCRTKPTD

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.3

1.02

0.8

76.2

39.9

Major BPS

84.1

0.85

0.9

75.3

39.4

Major PPT

91.8

0.94

0.7

84.6

Minor 5ss

32.1

-2

3.1

40.6

45.6

Minor BPS

75.6

0.89

1.5

91.64

31.3

Associated Gene:

Gene:

MATN1

Ensembl Gene ID:

ENSAPLG00000008828

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009203

2214655 - 2232865

18211