Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_2218059_2224016_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2218059 - 2224016

Intron Length:

5958

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGGAGG

5'SS Class:

strong_major

3'SS Sequence:

CCTCTCTGTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTCAC

U12 Branch Point Sequence:

TTTCACACACAC

Flanking Amino Acid:

ARLRSPNINKVAIVVTDGRP

Intron Amino Acid Position:

146

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.5

0.91

0.9

73.4

43.3

Major BPS

72.3

0.55

1.2

77.4

37.4

Major PPT

0.61

0.9

32.5

Minor 5ss

31.7

-2.1

3.1

39.7

45.9

Minor BPS

39.7

-0.8

2.1

56.03

41.3

Associated Gene:

Gene:

MATN1

Ensembl Gene ID:

ENSAPLG00000008828

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009203

2214655 - 2232865

18211