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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_2224240_2226760_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2224240 - 2226760
Intron Length:
2521

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
CTGTTTTTAATC
Flanking Amino Acid:
LTHKFQEAFCVVSDLCATGD
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
77.1
37.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
92.5
0.96
0.6
88.3
21.4
Minor 5ss
37
-1.5
3
48.7
41.1
Minor BPS
68
0.54
1.2
68.78
38

Associated Gene:

Gene:
MATN1
Ensembl Gene ID:
ENSAPLG00000008828
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009203
2214655 - 2232865
18211