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Intron Name: Anas_platyrhynchos_platyrhynchos_24_2227556_2229462_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2227556 - 2229462

Intron Length:

1907

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAGGTCTA

5'SS Class:

strong_major

3'SS Sequence:

TTATTGCTCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTTAT

U12 Branch Point Sequence:

TGGTTCTTATTG

Flanking Amino Acid:

TDAAKKAKDLGFRMFAVGVG

Intron Amino Acid Position:

400

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.4

0.86

0.9

38.6

Major BPS

91.4

1.03

0.7

79.9

34.9

Major PPT

78.5

0.64

0.9

72.6

37.4

Minor 5ss

36.4

-1.5

3.3

49.3

46.9

Minor BPS

56.2

0.06

1.7

59.24

43.2

Associated Gene:

Gene:

MATN1

Ensembl Gene ID:

ENSAPLG00000008828

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009203

2214655 - 2232865

18211