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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_2229616_2230160_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2229616 - 2230160
Intron Length:
545

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGAGTG
5'SS Class:
major
3'SS Sequence:
CTCTGTTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TTCCACTTAACA
Flanking Amino Acid:
GKKLQMKICIEEDPCECKSI
Intron Amino Acid Position:
451

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
0.9
67.7
37.5
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
77.2
0.61
0.8
71.5
33
Minor 5ss
28.7
-2.4
3.4
35.1
42.4
Minor BPS
71
0.66
1.5
78.12
38.1

Associated Gene:

Gene:
MATN1
Ensembl Gene ID:
ENSAPLG00000008828
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009203
2214655 - 2232865
18211