About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_23258_28101_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23258 - 28101
Intron Length:
4844

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGGGC
5'SS Class:
major
3'SS Sequence:
CATTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTCTTTCTAATG
Flanking Amino Acid:
SRAYCRGFCQTLLQYAGSRG
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
65.7
40
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
87.2
0.84
0.7
84.9
29.5
Minor 5ss
28.5
-2.5
3.6
41.2
45.5
Minor BPS
55.5
0.03
1.7
62.82
40.1

Associated Gene:

Gene:
RLF
Ensembl Gene ID:
ENSAPLG00000011786
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012274
23045 - 74585
51541