Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_2381383_2382256_R

Intron Information:

Intron Rank:

144665

Intron Class:

major

Intron Phase:

Intron Coordinates:

2381383 - 2382256

Intron Length:

874

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTT|GTGAGTGCA

5'SS Class:

major

3'SS Sequence:

TTTGTCTCCACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAATGAT

U12 Branch Point Sequence:

TTTGTCTCCACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.4

0.51

65.9

33.1

Major BPS

0.45

57.8

Major PPT

0.72

0.8

76.7

32.1

Minor 5ss

30.1

-2.3

3.1

38.4

40.8

Minor BPS

50.3

2.1

70.77

41.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025189

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044858

2379587 - 2382977

3391