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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_2382426_2382579_R

Intron Information:

Intron Rank:
144666
Intron Class:
major
Intron Phase:
Intron Coordinates:
2382426 - 2382579
Intron Length:
154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGCAAA
5'SS Class:
major
3'SS Sequence:
TGTCTTCATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TGTGTCTTCATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
69.6
36.5
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
78.8
0.65
0.9
73.2
36.4
Minor 5ss
40.5
-1.1
2.9
50.2
41.5
Minor BPS
53.8
0.11
1.8
67
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025189
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044858
2379587 - 2382977
3391