Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_2401596_2401801_F

Intron Information:

Intron Rank:

132035

Intron Class:

major

Intron Phase:

Intron Coordinates:

2401596 - 2401801

Intron Length:

206

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGCTTTTT

5'SS Class:

major

3'SS Sequence:

CATGTGCTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTTAC

U12 Branch Point Sequence:

TTAGTGTCAAAG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.9

0.59

76.9

34.3

Major BPS

81.5

0.78

0.9

71.6

36.1

Major PPT

73.4

0.53

65.5

40.7

Minor 5ss

39.7

-1.2

3.2

58.4

46.1

Minor BPS

41.3

-0.8

2.3

49.14

44.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020920

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045552

2400836 - 2402289

1454