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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_2490590_2495920_F

Intron Information:

Intron Rank:
141940
Intron Class:
major
Intron Phase:
Intron Coordinates:
2490590 - 2495920
Intron Length:
5331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTACGTAGT
5'SS Class:
major
3'SS Sequence:
TATCTCTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
ATTTTCTCAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1.1
72.9
44.2
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
80.1
0.68
0.7
78.3
30.2
Minor 5ss
35.9
-1.6
3
42.6
44.2
Minor BPS
76.3
0.9
1.4
90.57
32.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026415
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048448
2490394 - 2504511
14118