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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_2493104_2493248_R

Intron Information:

Intron Rank:
135847
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
2493104 - 2493248
Intron Length:
145

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
GGCCATGATCCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TGTTTCTTATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.1
69.5
41.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
57.3
0.17
1.1
46.4
44.8
Minor 5ss
39
-1.2
2.8
55.8
41.5
Minor BPS
66.7
0.5
1.5
74.49
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020493
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026612
2491200 - 2493356
2157