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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_2542570_2545458_R

Intron Information:

Intron Rank:
147645
Intron Class:
major
Intron Phase:
Intron Coordinates:
2542570 - 2545458
Intron Length:
2889

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCTGATTT
5'SS Class:
major
3'SS Sequence:
TCTCTTTCCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TCTTATTTAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.3
74.2
37.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
81
0.7
0.7
80.8
24.4
Minor 5ss
45.4
-0.5
2.9
65.3
45.9
Minor BPS
65.6
0.35
1.5
67.74
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026778
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027129
2537248 - 2545725
8478