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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_2755542_2757781_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2755542 - 2757781
Intron Length:
2240

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTACGTGTG
5'SS Class:
major
3'SS Sequence:
TCCCTCCCCGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
ATATCCTTAACG
Flanking Amino Acid:
NNYINAALTDSYTKSAAFIV
Intron Amino Acid Position:
1235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1.1
69.3
41.6
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
70.5
0.46
0.7
65.6
23.3
Minor 5ss
37.7
-1.4
3.5
53
44.5
Minor BPS
82.8
0.89
1.2
79.18
36.7

Associated Gene:

Gene:
PTPRU
Ensembl Gene ID:
ENSAPLG00000006899
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007376
2747808 - 2787977
40170