Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_2757956_2758068_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2757956 - 2758068

Intron Length:

113

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGCGGC

5'SS Class:

strong_major

3'SS Sequence:

TGTCTGCCTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGCTAAG

U12 Branch Point Sequence:

ATGGAGCTAAGG

Flanking Amino Acid:

NSSQLREEFQTLNSVTPHLD

Intron Amino Acid Position:

1177

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.2

0.78

0.9

66.6

39.6

Major BPS

48.6

-0

1.5

55.4

40.2

Major PPT

76.8

0.6

0.9

69.9

36.6

Minor 5ss

31.2

-2.1

3.3

41.1

45.6

Minor BPS

-1.3

2.4

38.9

44.2

Associated Gene:

Gene:

PTPRU

Ensembl Gene ID:

ENSAPLG00000006899

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007376

2747808 - 2787977

40170