Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_2758219_2758573_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

2758219 - 2758573

Intron Length:

355

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGCGGG

5'SS Class:

strong_major

3'SS Sequence:

CCCTCCCCAAAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TGTTCAC

U12 Branch Point Sequence:

CCCTCCCCAAAA

Flanking Amino Acid:

SRRINMIQTEEQYVFIHDAI

Intron Amino Acid Position:

1127

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.2

0.76

0.9

63.1

43.4

Major BPS

74.9

0.62

1.1

77.4

37.4

Major PPT

0.14

56.4

26.2

Minor 5ss

30.3

-2.3

3.3

37.8

47.1

Minor BPS

45.3

-0.3

53.36

44.7

Associated Gene:

Gene:

PTPRU

Ensembl Gene ID:

ENSAPLG00000006899

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007376

2747808 - 2787977

40170