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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_2764756_2766273_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2764756 - 2766273
Intron Length:
1518

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGGACG
5'SS Class:
major
3'SS Sequence:
CCCCTGCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGCCAT
U12 Branch Point Sequence:
TGCCCCCCGATG
Flanking Amino Acid:
FMDTHNYSNRGDQRSSVVNE
Intron Amino Acid Position:
832

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
67
44.2
Major BPS
48.8
-0
1.5
58.2
48.3
Major PPT
67.2
0.39
0.8
59.8
29.8
Minor 5ss
32.1
-2
3
32.9
41.7
Minor BPS
42.8
-0.7
1.9
46.04
40.5

Associated Gene:

Gene:
PTPRU
Ensembl Gene ID:
ENSAPLG00000006899
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007376
2747808 - 2787977
40170