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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_2769332_2770001_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2769332 - 2770001
Intron Length:
670

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTCC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCTGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
TGAGCACTGACC
Flanking Amino Acid:
RLNCIRIARKAACKESKRPL
Intron Amino Acid Position:
733

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.9
75.8
35
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
77
0.61
0.9
73.5
31.4
Minor 5ss
45.1
-0.5
2.8
60
44.7
Minor BPS
45.4
-0.3
2
57.64
40.7

Associated Gene:

Gene:
PTPRU
Ensembl Gene ID:
ENSAPLG00000006899
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007376
2747808 - 2787977
40170