Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_2770039_2771627_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2770039 - 2771627

Intron Length:

1589

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTGAGTAGC

5'SS Class:

strong_major

3'SS Sequence:

CTTTCCTCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTGCAT

U12 Branch Point Sequence:

CCAGCCTGACTC

Flanking Amino Acid:

YFQAMSNLKGETRLNCIRIA

Intron Amino Acid Position:

721

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.9

0.75

72.2

39.5

Major BPS

0.62

1.4

85.7

34.9

Major PPT

86.3

0.82

0.7

24.1

Minor 5ss

30.2

-2.3

2.6

28.5

Minor BPS

44.4

-0.4

1.8

47.2

42.7

Associated Gene:

Gene:

PTPRU

Ensembl Gene ID:

ENSAPLG00000006899

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007376

2747808 - 2787977

40170