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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_2772092_2772868_R

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
2772092 - 2772868
Intron Length:
777

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CTG|GCGCCGAGT
5'SS Class:
weak_major
3'SS Sequence:
ACTCCCTTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGTTTAC
U12 Branch Point Sequence:
TGTGGTTTACTC
Flanking Amino Acid:
FTYLVRPLGSAPTFDYGDMP
Intron Amino Acid Position:
595

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.9
0.07
1.3
55.2
42
Major BPS
53.6
0.09
1.4
49.1
46
Major PPT
79.6
0.67
0.8
73
31
Minor 5ss
22.8
-3.1
4.1
36.5
42.6
Minor BPS
46
-0.3
2
57.91
42

Associated Gene:

Gene:
PTPRU
Ensembl Gene ID:
ENSAPLG00000006899
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007376
2747808 - 2787977
40170