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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_2773488_2776458_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2773488 - 2776458
Intron Length:
2971

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGGGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTCCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
TCGTCCTCACAT
Flanking Amino Acid:
KEVTFQTDEDVPGGIASESL
Intron Amino Acid Position:
495

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
67.1
38.4
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
84
0.76
0.7
77
31.7
Minor 5ss
30
-2.3
3.5
39.6
45.9
Minor BPS
49.7
0.06
2
69.26
47.2

Associated Gene:

Gene:
PTPRU
Ensembl Gene ID:
ENSAPLG00000006899
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007376
2747808 - 2787977
40170