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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_2812191_2812263_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2812191 - 2812263
Intron Length:
73

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACCTGC
5'SS Class:
major
3'SS Sequence:
GTGCTCCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTGCAT
U12 Branch Point Sequence:
CTCTCTGCATCT
Flanking Amino Acid:
INPADINMIQGTYAILAPLP
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.2
64.1
43.4
Major BPS
62.4
0.31
1.4
73.6
41.8
Major PPT
68.9
0.43
0.9
61.6
35
Minor 5ss
49.7
-0
2.6
68.4
42.6
Minor BPS
43
-0.4
2.3
63.14
47.4

Associated Gene:

Gene:
MECR
Ensembl Gene ID:
ENSAPLG00000006736
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042233
2810476 - 2816585
6110
ENSAPLT00000041785
2807942 - 2816585
8644
ENSAPLT00000006997
2811727 - 2816585
4859
ENSAPLT00000045362
2807441 - 2816585
9145