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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_2812396_2813942_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
2812396 - 2813942
Intron Length:
1547

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
CTGCGATGCCCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
TGCTCACGAAAC
Flanking Amino Acid:
DWVIPADAGLGTWRTQAVFP
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
76.6
34.9
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
59.3
0.21
1
49.9
43
Minor 5ss
38.5
-1.3
2.9
46.1
43.6
Minor BPS
43.4
-0.5
2
55.93
41.3

Associated Gene:

Gene:
MECR
Ensembl Gene ID:
ENSAPLG00000006736
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042233
2810476 - 2816585
6110
ENSAPLT00000041785
2807942 - 2816585
8644
ENSAPLT00000028930
2808527 - 2816585
8059
ENSAPLT00000006997
2811727 - 2816585
4859
ENSAPLT00000045362
2807441 - 2816585
9145