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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_2814278_2814635_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2814278 - 2814635
Intron Length:
358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCTCAT
U12 Branch Point Sequence:
TGCTGCCTCATG
Flanking Amino Acid:
GIRTINVVRDRPDLPKLVER
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.8
1.03
0.7
89.6
22.7
Major BPS
64.6
0.36
1.3
67.6
40.6
Major PPT
81.7
0.71
0.7
74
31.1
Minor 5ss
32.9
-1.9
2.7
43.2
43.8
Minor BPS
41
-0.8
2.3
48.17
45.6

Associated Gene:

Gene:
MECR
Ensembl Gene ID:
ENSAPLG00000006736
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028930
2808527 - 2816585
8059
ENSAPLT00000006997
2811727 - 2816585
4859
ENSAPLT00000045362
2807441 - 2816585
9145
ENSAPLT00000042233
2810476 - 2816585
6110
ENSAPLT00000041785
2807942 - 2816585
8644