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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_2815223_2815683_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2815223 - 2815683
Intron Length:
461

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTTGG
5'SS Class:
major
3'SS Sequence:
CTTCCTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACCCAA
U12 Branch Point Sequence:
CTGTGGGTAACC
Flanking Amino Acid:
KSTTEMLRHLQPKGTMVTYG
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.1
63.8
43.3
Major BPS
48.6
-0
1.1
56.4
30.9
Major PPT
85.9
0.81
0.7
80.4
24.8
Minor 5ss
41.8
-0.9
2.8
54.9
43.3
Minor BPS
41
-0.7
2.8
57.14
47.8

Associated Gene:

Gene:
MECR
Ensembl Gene ID:
ENSAPLG00000006736
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028930
2808527 - 2816585
8059
ENSAPLT00000006997
2811727 - 2816585
4859
ENSAPLT00000042233
2810476 - 2816585
6110
ENSAPLT00000041785
2807942 - 2816585
8644