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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_2815745_2816235_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2815745 - 2816235
Intron Length:
491

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
CTGCTTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAC
U12 Branch Point Sequence:
CAGATCTCACCT
Flanking Amino Acid:
MAKQPVTVPVSAFIFRDVRL
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.8
82.3
30
Major BPS
76.2
0.65
0.9
77.4
26.5
Major PPT
81.7
0.71
0.8
76.6
32
Minor 5ss
33.1
-1.9
2.7
40.7
39.2
Minor BPS
45.2
-0.2
1.8
57.44
45.2

Associated Gene:

Gene:
MECR
Ensembl Gene ID:
ENSAPLG00000006736
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028930
2808527 - 2816585
8059
ENSAPLT00000006997
2811727 - 2816585
4859
ENSAPLT00000042233
2810476 - 2816585
6110
ENSAPLT00000041785
2807942 - 2816585
8644