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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_2816309_2816421_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2816309 - 2816421
Intron Length:
113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCTGA
5'SS Class:
major
3'SS Sequence:
TCTTCCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGGGAT
U12 Branch Point Sequence:
GTAAGAGCAATC
Flanking Amino Acid:
MTQWKKDHAHDKESLSSMMD
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
63.7
39
Major BPS
49
-0
1.5
48.8
46.3
Major PPT
86.6
0.82
0.7
81
24.1
Minor 5ss
37.9
-1.4
3
43.9
45.7
Minor BPS
33.4
-1.2
2.3
42.32
38.1

Associated Gene:

Gene:
MECR
Ensembl Gene ID:
ENSAPLG00000006736
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006997
2811727 - 2816585
4859
ENSAPLT00000045362
2807441 - 2816585
9145
ENSAPLT00000042233
2810476 - 2816585
6110
ENSAPLT00000041785
2807942 - 2816585
8644
ENSAPLT00000028930
2808527 - 2816585
8059