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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_2828839_2830145_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2828839 - 2830145
Intron Length:
1307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTCTC
5'SS Class:
strong_major
3'SS Sequence:
GCTTCTGTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAC
U12 Branch Point Sequence:
TTAACGTTGAGC
Flanking Amino Acid:
RSYSRSRSHSRSRSRSRHSH
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
77.9
36.9
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
77.9
0.63
0.9
68.7
42
Minor 5ss
44.9
-0.6
2.8
61.5
43.4
Minor BPS
46.9
-0.2
2.3
63.17
42.6

Associated Gene:

Gene:
SRSF4
Ensembl Gene ID:
ENSAPLG00000006595
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006854
2824463 - 2831180
6718