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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_2855398_2856545_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2855398 - 2856545
Intron Length:
1148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTGATTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTCAT
U12 Branch Point Sequence:
TTGTTTTTGATT
Flanking Amino Acid:
SRRNTKPIKQVVPAKKKVWN
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
76.3
30.6
Major BPS
74.8
0.62
0.9
75.3
29.7
Major PPT
73
0.52
1
74.6
40
Minor 5ss
37.7
-1.4
3
46.2
49.1
Minor BPS
70.3
0.72
1.1
81.5
34.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016290
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027574
2853093 - 2884087
30995
ENSAPLT00000017011
2836962 - 2879797
42836