Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_2879597_2882958_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2879597 - 2882958

Intron Length:

3362

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGCCAA

5'SS Class:

strong_major

3'SS Sequence:

TTTGCACCTCTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TAATTTTTATCT

Flanking Amino Acid:

KEQASVFREEQIDGEAFLLL

Intron Amino Acid Position:

654

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.4

0.9

74.1

38.3

Major BPS

96.5

1.15

0.6

34.2

Major PPT

0.52

0.9

63.9

38.3

Minor 5ss

37.2

-1.4

48.3

Minor BPS

63.6

0.51

1.5

77.42

39.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016290

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027574

2853093 - 2884087

30995