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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_2924081_2925925_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2924081 - 2925925
Intron Length:
1845

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCCTAT
U12 Branch Point Sequence:
TTGTCTCCCACA
Flanking Amino Acid:
TKTITYEAAQTDGGNGDLDP
Intron Amino Acid Position:
797

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.5
36.8
Major BPS
53.6
0.09
1.4
52.4
44.8
Major PPT
78.5
0.64
0.8
73
32
Minor 5ss
38.5
-1.3
3.4
55.9
48.3
Minor BPS
45.6
-0.3
2.2
63.98
42.6

Associated Gene:

Gene:
EPB41
Ensembl Gene ID:
ENSAPLG00000016409
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023943
2922060 - 2965483
43424
ENSAPLT00000017134
2922060 - 2968347
46288
ENSAPLT00000046405
2922060 - 2968330
46271