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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_2926055_2941400_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2926055 - 2941400
Intron Length:
15346

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
ACCTGTTCCATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
CTGTTTTTAACC
Flanking Amino Acid:
NGQIPTGADGPPLVKTQTVT
Intron Amino Acid Position:
754

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1
68.6
36.4
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
66.9
0.38
0.8
60.9
34.6
Minor 5ss
32.8
-2
2.6
34.8
34.3
Minor BPS
72
0.67
1.2
73.03
38.7

Associated Gene:

Gene:
EPB41
Ensembl Gene ID:
ENSAPLG00000016409
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017134
2922060 - 2968347
46288