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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_2941581_2947371_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2941581 - 2947371
Intron Length:
5791

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGCAG
5'SS Class:
major
3'SS Sequence:
CTTTCGCTACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
TCCCCATTCATT
Flanking Amino Acid:
AKAEPADASKDLDKTQEEIK
Intron Amino Acid Position:
556

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
62.2
43.8
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
70
0.45
0.9
63.2
38.3
Minor 5ss
36.2
-1.6
3.2
46.2
49.1
Minor BPS
48
-0
2
66.07
44.9

Associated Gene:

Gene:
EPB41
Ensembl Gene ID:
ENSAPLG00000016409
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023943
2922060 - 2965483
43424