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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_2953588_2954159_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2953588 - 2954159
Intron Length:
572

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAATC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTAAAT
U12 Branch Point Sequence:
CTCCACTTAAAT
Flanking Amino Acid:
MYGVDLHQAKDLEGVDITLG
Intron Amino Acid Position:
403

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.8
84.1
26.4
Major BPS
70
0.5
1.1
76.9
32.8
Major PPT
88.6
0.87
0.6
87.8
22.3
Minor 5ss
32.6
-2
3
42.8
44.4
Minor BPS
57.3
0.31
1.7
71.82
44.5

Associated Gene:

Gene:
EPB41
Ensembl Gene ID:
ENSAPLG00000016409
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046405
2922060 - 2968330
46271
ENSAPLT00000023943
2922060 - 2965483
43424
ENSAPLT00000017134
2922060 - 2968347
46288