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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_2954248_2956451_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2954248 - 2956451
Intron Length:
2204

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGTAC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTATGAGAATA
Flanking Amino Acid:
EKVMELHKTYRSMTPAQADL
Intron Amino Acid Position:
373

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
75.2
30.5
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
83.3
0.75
0.7
76.5
32.1
Minor 5ss
31.6
-2.1
3.2
40.1
46.3
Minor BPS
43
-0.5
2.3
61.51
38.7

Associated Gene:

Gene:
EPB41
Ensembl Gene ID:
ENSAPLG00000016409
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046405
2922060 - 2968330
46271
ENSAPLT00000023943
2922060 - 2965483
43424
ENSAPLT00000017134
2922060 - 2968347
46288