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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_2959530_2962771_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2959530 - 2962771
Intron Length:
3242

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
TATCCTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATGTTTTTATCC
Flanking Amino Acid:
LAIWDTPTSRTWLDPAKEIK
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1
75.5
40.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83.1
0.74
0.8
76.6
31.7
Minor 5ss
34.8
-1.7
3
41.4
44.7
Minor BPS
60.1
0.3
1.6
67.69
38.4

Associated Gene:

Gene:
EPB41
Ensembl Gene ID:
ENSAPLG00000016409
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023943
2922060 - 2965483
43424
ENSAPLT00000017134
2922060 - 2968347
46288
ENSAPLT00000046405
2922060 - 2968330
46271