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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_2962877_2965234_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2962877 - 2965234
Intron Length:
2358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TGTCTATTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAA
U12 Branch Point Sequence:
TGTGCTATAAAA
Flanking Amino Acid:
DDTIFECAVDKHAKGQDLLK
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
82.7
29.2
Major BPS
65.3
0.38
1
71.6
30.1
Major PPT
83.2
0.75
0.8
77.4
35.8
Minor 5ss
38.4
-1.3
2.7
48.5
40.3
Minor BPS
51.5
0.04
1.8
66.33
39.8

Associated Gene:

Gene:
EPB41
Ensembl Gene ID:
ENSAPLG00000016409
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046405
2922060 - 2968330
46271
ENSAPLT00000023943
2922060 - 2965483
43424
ENSAPLT00000017134
2922060 - 2968347
46288