Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3015959_3016127_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

3015959 - 3016127

Intron Length:

169

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTGCCACTG

5'SS Class:

weak_major

3'SS Sequence:

GTCTGCCCTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AACTCAC

U12 Branch Point Sequence:

ACTCTCTCCATG

Flanking Amino Acid:

AFLIFGLDLLVEPQACTYPC

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

54.4

0.1

1.2

46.2

43.6

Major BPS

68.4

0.46

0.9

69.3

26.9

Major PPT

72.9

0.51

0.9

62.3

39.8

Minor 5ss

34.7

-1.7

3.4

44.3

45.4

Minor BPS

43.4

-0.6

1.9

46.65

40.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000002488

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002499

3011268 - 3016181

4914