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Intron Name: Anas_platyrhynchos_platyrhynchos_24_3074923_3075267_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

3074923 - 3075267

Intron Length:

345

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTGAGTGGC

5'SS Class:

strong_major

3'SS Sequence:

CTTCCCTCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTGAC

U12 Branch Point Sequence:

TCCTTCTGACCG

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.3

0.72

66.6

39.6

Major BPS

81.4

0.78

0.9

71.3

36.7

Major PPT

77.5

0.62

0.7

69.2

31.4

Minor 5ss

27.1

-2.6

26.2

36.9

Minor BPS

-0.2

1.8

55.07

46.3

Associated Gene:

Gene:

RAB42

Ensembl Gene ID:

ENSAPLG00000017350

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042152

3074818 - 3077855

3038