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Intron Name: Anas_platyrhynchos_platyrhynchos_24_3076691_3077251_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3076691 - 3077251

Intron Length:

561

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGTGG

5'SS Class:

strong_major

3'SS Sequence:

CCCCTGTGCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTGAG

U12 Branch Point Sequence:

GGGTGCTGAGCA

Flanking Amino Acid:

LWDTAGQERFRSITRSFYRS

Intron Amino Acid Position:

177

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.5

0.79

0.9

66.5

41.6

Major BPS

52.2

0.06

1.6

51.1

46.3

Major PPT

0.32

55.7

38.9

Minor 5ss

30.7

-2.2

3.2

37.8

47.1

Minor BPS

44.7

-0.4

2.1

54.04

Associated Gene:

Gene:

RAB42

Ensembl Gene ID:

ENSAPLG00000017350

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042152

3074818 - 3077855

3038