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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3084423_3086456_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3084423 - 3086456
Intron Length:
2034

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGGGGG
5'SS Class:
major
3'SS Sequence:
TTTCTTCCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAC
U12 Branch Point Sequence:
TCTTTGCTAACC
Flanking Amino Acid:
GPGPAAGHGELIGSGPHNPK
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
58.9
46
Major BPS
69.4
0.48
1.1
69.6
35.5
Major PPT
89
0.88
0.6
81.6
30.5
Minor 5ss
27.5
-2.6
3.6
37.8
47
Minor BPS
50
-0
2.3
70.2
41.5

Associated Gene:

Gene:
TAF12
Ensembl Gene ID:
ENSAPLG00000002881
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038727
3080160 - 3086630
6471