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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_3090272_3090381_R

Intron Information:

Intron Rank:
138240
Intron Class:
major
Intron Phase:
Intron Coordinates:
3090272 - 3090381
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTTTC
5'SS Class:
major
3'SS Sequence:
CCTCCCCTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAG
U12 Branch Point Sequence:
GGGCCCCCAGCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
76.8
32.7
Major BPS
44.4
-0.3
1.6
54.3
42.9
Major PPT
79.3
0.66
0.7
72.6
25.5
Minor 5ss
53.3
0.11
2.3
70.3
40.3
Minor BPS
42
-0.5
2
56.85
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021908
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032240
3090178 - 3094034
3857